Biosynthetic Gene Clusters and Liquid Chromatography Coupled to Mass Spectrometry Analysis of Aryl Polyene Pigments from Chryseobacterium sp. kr6 and Lysobacter sp. A03

Abstract

Aryl polyene (APE) are bacterial pigments which show great biotechnological potential because of their biological activities. In this study, the presence of gene clusters associated with APE synthesis was investigated in the genome of Chryseobacterium sp. kr6 and Lysobacter sp. A03. The pigments extracted from strains kr6 and A03 were further characterized by liquid chromatography coupled to a high-resolution mass spectrometer (LC-DAD-MS). These bacteria harbor the relevant genes for APE biosynthesis; while kr6 may produce flexirubin pigments and have a 75% similarity with the flexirubin cluster from Flavobacterium johnsoniae UW101, Lysobacter sp. A03 showed a 50% similarity with the xanthomonadin I gene cluster from Xanthomonas oryzae pv. oryzae. A comparison with the gene clusters of APE-producing bacteria revealed that kr6 and A03 harbor genes for key proteins that participate in APE biosynthesis, such as acyl carrier proteins, acyl dehydratases and acyl reductases. The LC-DAD-MS analysis revealed that kr6 produces a possible mixture of flexirubins, whereas the yellow pigment from A03 is proposed to be a xanthomonadin-like pigment. Although the fine molecular structure of these pigments are not yet fully elucidated, strains kr6 and A03 present great potential for the production of natural bioactive pigments.